#include <def.h>
Public Attributes | |
char * | fileName |
File name of experiment. | |
long | nobs |
Number of observed quantities. | |
long | nvar |
Number of variables/equations. | |
long | nMeasure |
Number of measured data. | |
double * | xMeasure |
Temporal data points. | |
double ** | yMeasure |
Data of the observations. | |
double ** | sigma |
Standard deviation of data. | |
double | fitstart |
Fitting range. | |
double | fitend |
long | firstMeasure |
First point in fitting range. | |
long | lastMeasure |
Last point in fitting range. | |
long | nPoints |
Number of multiple shooting intervals. | |
double * | mesh |
Multiple shooting mesh. | |
double ** | yTry |
Initial guesses at mesh points. | |
double ** | yTrySave |
long | me |
Number of equality constraints. | |
long | mg |
Number of inequality constraints. | |
double | objF |
Current value of the objective function. | |
double ** | yComp |
Predicted trajectory (intergation). | |
double ** | yPred |
Predicted observables (intergation). | |
double ** | h |
Discrepancies/deviation form continuous trajectories. | |
double ** | residues |
Current residues. | |
double * | r2 |
Right-hand side of equality constraints. | |
double * | r3 |
Right-hand side of inequality constraints. | |
double *** | dyds |
Derivative of the trajectory with respect to intial values inside the multiple shooting interval. | |
double *** | dydp |
Derivative of the trajectory with respect to parameters inside the multiple shooting interval. | |
double *** | dmds |
Derivative of the observed quantities with respect to intial values inside the multiple shooting interval. | |
double *** | dmdp |
Derivative of the observed quantities with respect to parameters inside the multiple shooting interval. | |
double *** | dR2ds |
Derivative of the equality constraints with respect to intial values inside the multiple shooting interval. | |
double ** | dR2dp |
Derivative of the equality constraints with respect to parameters. | |
double *** | dR3ds |
Derivative of the inequality constraints with respect to intial values inside the multiple shooting interval. | |
double ** | dR3dp |
Derivative of the inequality constraints with respect to parameters. | |
double * | ua |
Condensation of the least squares. | |
double ** | Ea |
double ** | Pa |
double * | ue |
Condensation of the equality constraints. | |
double ** | Ee |
double ** | Pe |
double * | ug |
Condensation of the inequality constraints. | |
double ** | Eg |
double ** | Pg |
double * | y0 |
Initial value. | |
double * | par |
Parameters. | |
double ** | dS |
double * | dP |
string * | splineFile |
Name of spline data-file. | |
double ** | splineNodes |
Spline nodes. | |
double ** | splineY |
Value at the spline nodes. | |
double ** | splineGam |
Second derivative at the spline nodes. | |
unsigned long * | nNodes |
Number of the spline nodes. | |
int | splinesDefined |
Flag: TRUE if splines are defined. | |
double * | errP |
double * | errY0 |
Definition at line 13 of file def.h.
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Derivative of the observed quantities with respect to parameters inside the multiple shooting interval. 3-tensor of dimension:
Definition at line 130 of file def.h. Referenced by initialise(), and intODE(). |
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Derivative of the observed quantities with respect to intial values inside the multiple shooting interval. 3-tensor of dimension:
Definition at line 124 of file def.h. Referenced by initialise(), and intODE(). |
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Derivative of the equality constraints with respect to parameters. Matrix of dimension:
Definition at line 142 of file def.h. Referenced by initialise(). |
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Derivative of the equality constraints with respect to intial values inside the multiple shooting interval. 3-tensor of dimension:
Definition at line 136 of file def.h. Referenced by initialise(). |
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Derivative of the inequality constraints with respect to parameters. Matrix of dimension:
Definition at line 154 of file def.h. Referenced by initialise(). |
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Derivative of the inequality constraints with respect to intial values inside the multiple shooting interval. 3-tensor of dimension:
Definition at line 148 of file def.h. Referenced by initialise(). |
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Definition at line 181 of file def.h. Referenced by decondense(). |
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Derivative of the trajectory with respect to parameters inside the multiple shooting interval. 3-tensor of dimension:
Definition at line 118 of file def.h. Referenced by initialise(), and intODE(). |
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Derivative of the trajectory with respect to intial values inside the multiple shooting interval. 3-tensor of dimension:
Definition at line 112 of file def.h. Referenced by initialise(), and intODE(). |
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Definition at line 195 of file def.h. Referenced by initialise(). |
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Definition at line 196 of file def.h. Referenced by initialise(). |
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File name of experiment.
Definition at line 17 of file def.h. Referenced by readData(). |
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First point in fitting range.
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Definition at line 46 of file def.h. Referenced by mexFunction(), and setMesh(). |
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Fitting range.
Definition at line 46 of file def.h. Referenced by mexFunction(), and setMesh(). |
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Discrepancies/deviation form continuous trajectories.
Matrix of dimension:
Definition at line 90 of file def.h. Referenced by computeRight(), and initialise(). |
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Last point in fitting range.
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Number of equality constraints.
Definition at line 68 of file def.h. Referenced by condense(), freeMem(), initialise(), and initValuesOK(). |
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Multiple shooting mesh. Vector of dimension:
Definition at line 61 of file def.h. Referenced by intODE(), setInitialValues(), and setMesh(). |
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Number of inequality constraints.
Definition at line 70 of file def.h. Referenced by condense(), freeMem(), initialise(), and initValuesOK(). |
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Number of measured data.
Definition at line 28 of file def.h. Referenced by computeRight(), freeMem(), initialise(), intODE(), objectiveF(), and setInitialValues(). |
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Number of the spline nodes.
Definition at line 192 of file def.h. Referenced by mexFunction(). |
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Number of observed quantities.
Definition at line 19 of file def.h. Referenced by computeRight(), condense(), freeMem(), initialise(), intODE(), mexFunction(), objectiveF(), outSimit(), readData(), and setInitialValues(). |
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Number of multiple shooting intervals. Command line argument is -nms and not -nPoints !! Definition at line 56 of file def.h. Referenced by computeRight(), condense(), decondense(), globOpt(), initialise(), intODE(), Norm(), setInitialValues(), setMesh(), and simInit(). |
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Number of variables/equations.
Definition at line 24 of file def.h. Referenced by call_odessa(), computeRight(), condense(), decondense(), freeMem(), initialise(), intODE(), mexFunction(), Norm(), outFit(), setInitialValues(), simInit(), solvLin(), and tabulateValues(). |
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Current value of the objective function.
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Parameters. Vector of dimension:
where npar is defined in structure Glob. Definition at line 180 of file def.h. Referenced by initialise(), mexFunction(), and tabulateValues(). |
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Right-hand side of equality constraints. Vector of dimension:
Definition at line 101 of file def.h. Referenced by initialise(), and initValuesOK(). |
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Right-hand side of inequality constraints. Vector of dimension:
Definition at line 106 of file def.h. Referenced by initValuesOK(). |
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Current residues.
Therefore matrix of dimension:
Definition at line 96 of file def.h. Referenced by initialise(), and objectiveF(). |
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Standard deviation of data. Matrix of dimension:
Definition at line 44 of file def.h. Referenced by objectiveF(). |
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Name of spline data-file.
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Second derivative at the spline nodes.
Definition at line 190 of file def.h. Referenced by mexFunction(). |
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Spline nodes.
Definition at line 186 of file def.h. Referenced by mexFunction(). |
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Flag: TRUE if splines are defined.
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Value at the spline nodes.
Definition at line 188 of file def.h. Referenced by mexFunction(). |
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Condensation of the least squares.
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Condensation of the equality constraints.
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Condensation of the inequality constraints.
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Temporal data points. Vector of dimension:
Definition at line 33 of file def.h. Referenced by intODE(), and setInitialValues(). |
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Initial value. Vector of dimension:
Definition at line 174 of file def.h. Referenced by mexFunction(), and simInit(). |
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Predicted trajectory (intergation). Matrix of dimension:
Definition at line 79 of file def.h. Referenced by initialise(). |
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Data of the observations. Matrix of dimension:
Definition at line 39 of file def.h. Referenced by setInitialValues(). |
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Predicted observables (intergation). Matrix of dimension:
Definition at line 84 of file def.h. Referenced by initialise(). |
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Initial guesses at mesh points. Matrix of dimension:
Definition at line 66 of file def.h. Referenced by fitness(), initialise(), setInitialValues(), and simInit(). |
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Definition at line 66 of file def.h. Referenced by initialise(). |